[ÖNBASKI] The first complete genome of the extinct European wild ass (Equus hemionus hydruntinus)
Mustafa Özkan, Kanat Gürün, Eren Yüncü, Kıvılcım Başak Vural, Gözde Atağ, Ali Akbaba, Fatma Rabia Fidan, Ekin Sağlıcan, N. Ezgi Altınışık, Dilek Koptekin, Kamilla Pawłowska, Ian Hodder, Sarah E. Adcock, Benjamin S. Arbuckle, Sharon R. Steadman, Gregory McMahon, Yılmaz Selim Erdal, Cemal Can Bilgin, Eva-Maria Geigl, Anders Götherström, Thierry Grange, Füsun Özer, Mehmet Somel (2023) bioRxiv 2023.06.05.543765
[ÖNBASKI] aMeta: an accurate and memory-efficient ancient Metagenomic profiling workflow
Zoé Pochon, Nora Bergfeldt, Emrah Kırdök, Mário Vicente, Thijessen Naidoo, Tom van der Valk, N. Ezgi Altınışık, Maja Krzewińska, Love Dalen, Anders Götherström, Claudio Mirabello, Per Unneberg, Nikolay Oskolkov (2022) bioRxiv 2022.10.03.510579
[ÖNBASKI] Under the shadow: Old-biased genes are subject to weak purifying selection at both the tissue and cell type-specific levels
Melih Yıldız, Hamit İzgi, Firuza Rahimova, Umut Berkay Altıntaş, Zeliha Gözde Turan, Mehmet Somel (2022) bioRxiv 2022.09.21.508695
Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean
Dilek Koptekin, Eren Yüncü, Ricardo Rodríguez-Varela, N. Ezgi Altınışık, Nikolaos Psonis,Natalia Kashuba, Sevgi Yorulmaz, Robert George, Duygu Deniz Kazancı, Damla Kaptan, Kanat Gürün, Kıvılcım Başak Vural, Hasan Can Gemici, Despoina Vassou, Evangelia Daskalaki, Cansu Karamurat, Vendela K. Lagerholm, Ömür Dilek Erdal, Emrah Kırdök, Aurelio Marangoni, Andreas Schachner, Handan Üstündağ, Ramaz Shengelia, Liana Bitadze, Mikheil Elashvili, Eleni Stravopodi, Mihriban Özbaşaran, Güneş Duru, Argyro Nafplioti, C. Brian Rose, Tuğba Gencer, Gareth Darbyshire, Alexander Gavashelishvili, Konstantine Pitskhelauri, Özlem Çevik, Osman Vuruşkan, Nina Kyparissi-Apostolika, Ali Metin Büyükkarakaya, Umay Oğuzhanoğlu, Sevinç Günel, Eugenia Tabakaki, Akper Aliev, Anar Ibrahimov, Vaqif Shadlinski, Adamantios Sampson, Gülşah Merve Kılınç, Çiğdem Atakuman, Alexandros Stamatakis, Nikos Poulakakis, Yılmaz Selim Erdal, Pavlos Pavlidis, Jan Storå, Füsun Özer, Anders Götherström, and Mehmet Somel (2022) Current Biology 33, 1-17
Somatic copy number variant load in neurons of healthy controls and Alzheimer’s disease patients
Zeliha Gözde Turan, Vincent Richter, Jana Bochmann, Poorya Parvizi, Etka Yapar, Ulaş Işıldak, Sarah-Kristin Waterholter, Sabrina Leclere-Turbant, Çağdaş Devrim Son, Charles Duyckaerts, İdil Yet, Thomas Arendt, Mehmet Somel, Uwe Ueberham (2022) Acta Neuropathologica Communications Volume 10, Article number: 175
Science and politics: The fight for evolution
N. Ezgi Altınışık (2022) eLife 11:e84343
A genomic snapshot of demographic and cultural dynamism in Upper Mesopotamia during the Neolithic Transition
N. Ezgi Altınışık, Duygu Deniz Kazancı, Ayça Aydoğan, Hasan Can Gemici, Ömür Dilek Erdal, Savaş Sarıaltun, Kıvılcım Başak Vural, Dilek Koptekin, Kanat Gürün, Ekin Sağlıcan, Daniel Fernandes, Gökhan Çakan, Meliha Melis Koruyucu, Vendela Kempe Lagerholm, Cansu Karamurat, Mustafa Özkan, Gülşah Merve Kılınç, Arda Sevkar, Elif Sürer, Anders Götherström, Çiğdem Atakuman, Yılmaz Selim Erdal, Füsun Özer, Aslı Erim Özdoğan, Mehmet Somel (2022) Science Advances, 8:44
MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes
Gözde Atağ, Kıvılcım Başak Vural, Damla Kaptan, Mustafa Özkan, Dilek Koptekin, Ekin Sağlıcan, Sevcan Doğramacı, Mevlüt Köz, Ardan Yılmaz, Arda Söylev, İnci Togan, Mehmet Somel, Füsun Özer (2022) Open Res Europe 2022, 2:100
New insights on commemoration of the dead through mortuary and architectural use of pigments at Neolithic Çatalhöyük, Turkey
Eline M. J. Schotsmans, G. Busacca, Sam Lin, Milena Vasić,, Rena Veropoulidou, Camilla Mazzucato, Belinda Tibbetts, Scott Donald Haddow, Mehmet Somel, F. Toksoy-Köksal, Christopher J. Knüsel, Marco Milella (2022) Scientific Reports
Indian genetic heritage in Southeast Asian populations
Piya Changmai, Kitipong Jaisamut, Jatupol Kampuansai, Wibhu Kutanan, N. Ezgi Altınışık, Olga Flegontova, Angkhana Inta, Eren Yüncü, Worrawit Boonthai, Horolma Pamjav, David Reich, Pavel Flegontov (2022) PLoS Genetics
From bones to genomes: Current research on the population history of prehistoric Anatolia
Duygu Deniz Kazancı, Ezgi Altınışık, Ayça Aydoğan, Füsun Özer, Elif Sürer, Çiğdem Atakuman, Mehmet Somel, Yılmaz Selim Erdal (2021) In The Archaeology of Anatolia, Volume IV: Recent Discoveries (2018–2020). Sharon R. Steadman, Gregory McMahon (Eds.) Cambridge Scholars Publishing, Cambridge
Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication
Erinç Yurtman, Onur Özer, Eren Yüncü, Nihan Dilşad Dağtaş, Dilek Koptekin, Yasin Gökhan Çakan, Mustafa Özkan, Ali Akbaba, Damla Kaptan, Gözde Atağ, Kıvılcım Başak Vural, Can Yümni Gündem, Louise Martin, Gülşah Merve Kılınç, Ayshin Ghalichi, Sinan Can Açan, Reyhan Yaka, Ekin Sağlıcan, Vendela Kempe Lagerholm, Maja Krzewińska, Torsten Günther, Pedro Morell Miranda, Evangelia Pişkin, Müge Şevketoğlu, C. Can Bilgin, Çiğdem Atakuman, Yılmaz Selim Erdal, Elif Sürer, N. Ezgi Altınışık, Johannes A. Lenstra, Sevgi Yorulmaz, Mohammad Foad Abazari, Javad Hoseinzadeh, Douglas Baird, Erhan Bıçakçı, Özlem Çevik, Fokke Gerritsen, Rana Özbal, Anders Götherström, Mehmet Somel, İnci Togan & Füsun Özer (2021) Communications Biology
Human inbreeding has decreased in time through the Holocene
Francisco C. Ceballos, Kanat Gürün, N. Ezgi Altınışık, Hasan Can Gemici, Cansu Karamurat, Dilek Koptekin, Kıvılcım Başak Vural, Igor Mapelli, Ekin Sağlıcan, Elif Sürer, Yılmaz Selim Erdal, Anders Götherström, Füsun Özer, Çiğdem Atakuman, Mehmet Somel (2021) Current Biology
Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes
Reyhan Yaka, Igor Mapelli, Damla Kaptan, Ayça Doğu, Maciej Chyleński, Ömür Dilek Erdal, Dilek Koptekin, Kıvılcım Başak Vural, Alex Bayliss, Camilla Mazzucato, Evrim Fer, Sevim Seda Çokoğlu, Vendela Kempe Lagerholm, Maja Krzewińska, Cansu Karamurat, Hasan Can Gemici,
Arda Sevkar, Nihan Dilşad Dağtaş, Gülşah Merve Kılınç, Donovan Adams, Arielle R. Munters, Ekin Sağlıcan, Marco Milella, Eline M.J. Schotsmans, Erinç Yurtman, Mehmet Çetin, Sevgi Yorulmaz, N. Ezgi Altınışık, Ayshin Ghalichi, Anna Juras, C. Can Bilgin, Torsten Günther, Jan Storå, Mattias Jakobsson, Maurice de Kleijn, Gökhan Mustafaoğlu, Andrew Fairbairn, Jessica Pearson, İnci Togan, Nurcan Kayacan, Arkadiusz Marciniak, Clark Spencer Larsen, Ian Hodder, Çiğdem Atakuman, Marin Pilloud, Elif Sürer, Fokke Gerritsen, Rana Özbal, Douglas Baird Yılmaz Selim Erdal, Güneş Duru, Mihriban Özbaşaran, Scott D. Haddow, Christopher J. Knüsel, Anders Götherström, Füsun Özer, Mehmet Somel (2021) Current Biology
Million-year-old DNA sheds light on the genomic history of mammoths
Tom van der Valk, Patrícia Pečnerová, David Díez-Del-Molino, Anders Bergström, Jonas Oppenheimer, Stefanie Hartmann, Georgios Xenikoudakis, Jessica A Thomas, Marianne Dehasque, Ekin Sağlıcan, Fatma Rabia Fidan, Ian Barnes, Shanlin Liu, Mehmet Somel, Peter D Heintzman, Pavel Nikolskiy, Beth Shapiro, Pontus Skoglund, Michael Hofreiter, Adrian M Lister, Anders Götherström, Love Dalén (2021) Nature
Human population dynamics and Yersinia pestis in ancient northeast Asia
Gülşah Merve Kılınç, Natalija Kashuba, Dilek Koptekin, Nora Bergfeldt, Handan Melike Dönertaş, Ricardo Rodríguez-Varela, Dmitrij Shergin, Grigorij Ivanov, Dmitrii Kichigin, Kjunnej Pestereva, Denis Volkov, Pavel Mandryka, Artur Kharinskii, Alexey Tishkin, Evgenij Ineshin, Evgeniy Kovychev, Aleksandr Stepanov, Love Dalén, Torsten Günther, Emrah Kırdök, Mattias Jakobsson, Mehmet Somel, Maja Krzewińska, Jan Storå, Anders Götherströmn (2021) Science Advances
Ancient genomics in Neolithic Central Anatolia and Çatalhöyük
Yaka, R., Doğu, A., Kaptan, D., Dağtaş, N. D., Chyleński, M., Vural, K. B., Altınışık, N. E., Mapelli, I., Koptekin, D., Karamurat, C., Gemici, H. C., Yorulmaz, S., Lagerholm, V. K., Fer, E., Işıldak, U., Ghalichi, A., Kılınç, G. M., Mazzucato, C., Juras, A., Marciniak, A., Larsen, C. S., Pilloud, M., Haddow, S. D., Knüsel, C. J., Togan, İ, Götherström, A., Erdal, Y. S., Sürer, E., Özer, F., Atakuman, Ç., and Somel, M. (2021) (2021), in Hodder I. (ed.) Peopling the Landscape of Çatalhöyük: Reports from the 2009-2017 Seasons. London: British Institute at Ankara.
Ancient mitochondrial genomes reveal the absence of maternal kinship in the burials of Çatalhöyük people and their genetic affinities
Maciej Chyleński, Edvard Ehler, Mehmet Somel, Reyhan Yaka, Maja Krzewińska, Mirosława Dabert,Anna Juras, Arkadiusz Marciniak (2019) Genes
Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads
Maja Krzewińska, Gülşah Merve Kılınç, Anna Juras, Dilek Koptekin, Maciej Chyleński, Alexey G. Nikitin, Nikolai Shcherbakov, Iia Shuteleva, Tatiana Leonova, Liudmila Kraeva, Flarit A. Sungatov, Alfija N. Sultanova, Inna Potekhina, Sylwia Łukasik, Marta Krenz-Niedbała, Love Dalén, Vitaly Sinika,Mattias Jakobsson,Jan Storå, Anders Götherström (2018) Science Advance
Genomic and strontium isotope variation reveal immigration patterns in a Viking Age town
Maja Krzewińska, Anna Kjellström, Torsten Günther, Charlotte Hedenstierna-Jonson, Torun Zachrisson, Ayça Omrak, Reyhan Yaka, Gülşah Merve Kılınç, Mehmet Somel, Veronica Sobrado, Jane Evans, Corina Knipper, Mattias Jakobsso, Jan Storå, Anders Götherström (2018) Current Biology
Investigating Holocene human population history in North Asia using ancient mitogenomes
Gülşah Merve Kılınç, Natalija Kashuba, Reyhan Yaka, Arev Pelin Sümer, Eren Yüncü,Dmitrij Shergin, Grigorij Leonidovich Ivanov, Dmitrii Kichigin, Kjunnej Pestereva, Denis Volkov, Pavel Mandryka, Artur Kharinskii, Alexey Tishkin, Evgenij Ineshin, Evgeniy Kovychev, Aleksandr Stepanov, Aanatolij Alekseev, Svetlana Aleksandrovna, Mehmet Somel, Mattias Jakobsson, Maja Krzewinska, Jan Storå, Anders Götherström (2018) Nature Scientific Reports
Archaeogenetics of Late Iron Age Çemialo Sırtı, Batman: Investigating maternal genetic continuity in north Mesopotamia since the Neolithic
Reyhan Yaka, Ayşegül Birand, Çigdem Atakuman, Yasemin Yılmaz, Ceren Caner, Sinan Can Açan, Sidar Gündüzalp, Poorya Parvizi, Aslı Erim Özdoğan, İnci Togan, Mehmet Somel (2018) American Journal of Physical Anthropology
Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean
Gülşah Merve Kılınç, Dilek Koptekin , Çigdem Atakuman, Arev Pelin Sümer, Reyhan Yaka, Cemal Can Bilgin, Ali Metin Büyükkarakaya, Douglas Baird, Ezgi Altınışık, Pavel Flegontov, Anders Göthersthorm,İnci Togan, Mehmet Somel (2017) Proceedings of the Royal Society B
Variation and functional impact of Neanderthal ancestry in Western Asia
Recep Özgür Taskent, Nurşen Duha Alioğlu, Evrim Fer, Handan Melike Dönertaş, Mehmet Somel, Ömer Gökçümen (2017) Genome Biology and Evolution
Gene expression reversal toward pre-adult levels in the aging human brain and age-related loss of cellular identity
Handan Melike Dönertaş, Hamit İzgi, Altuğ Kamacıoğlu, Zhisong He, Philipp Khaitovich, Mehmet Somel (2017) Scientific Reports
The demographic development of the first farmers in Anatolia
Gülşah Merve Kılınç, Ayça Omrak, Füsun Özer, Torsten Günther, Ali Metin Büyükkarakaya, Erhan Bıçakçı, Douglas Baird, Handan Melike Dönertaş, Ayshin Ghalichi, Reyhan Yaka, Dilek Koptekin, Sinan Can Açan, Poorya Parvizi, Maja Krzewinska, Evangelia A. Daskalaki, Eren Yüncü, Nihan Dilşad Dağtaş, Andrew Fairbairn, Jessica Pearson, Gökhan Mustafaoğlu, Yılmaz Selim Erdal, Yasin Gökhan Çakan, İnci Togan, Mehmet Somel, Jan Storå, Mattias Jakobsson, Anders Götherström (2016) Current Biology
Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa
Can Alkan, Pınar Kavak, Mehmet Somel, Ömer Gökçümen, Serkan Uğurlu, Ceren Saygı, Elif Dal, Kuyaş Buğra, Tunga Güngör, S Cenk Şahinalp, Nesrin Özören, Cemalettin Bekpen (2014) BMC Genomics
Assessing the spatial dependence of adaptive loci in 43 European and Western Asian goat breeds using AFLP markers
Licia Colli, Stéphane Joost, Riccardo Negrini, Letizia Nicoloso, Paola Crepaldi, Paolo Ajmone-Marsan, the ECONOGENE Consortium (2014) PLoS One
Classic selective sweeps revealed by massive sequencing in cattle
Saber Qanbari, Hubert Pausch, Sandra Jansen, Mehmet Somel, Tim M. Strom, Ruedi Fries, Rasmus Nielsen, Henner Simianer (2014) PLoS Genetics
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
Emilia Huerta-Sánchez, Xin Jin, Asan, Zhuoma Bianba, Benjamin M. Peter, Nicolas Vinckenbosch, Yu Liang, Xin Yi, Mingze He, Mehmet Somel, Peixiang Ni, Bo Wang, Xiaohua Ou, Huasang, Jiangbai Luosang, Zha Xi Ping Cuo, Kui Li, Guoyi Gao, Ye Yin, Wei Wang, Xiuqing Zhang, Xun Xu, Huanming Yang, Yingrui Li, Jian Wang, Jun Wang, Rasmus Nielsen (2014) Nature
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
Shiping Liu, Eline D. Lorenzen, Matteo Fumagalli, Bo Li, Kelley Harris, Zijun Xiong, Long Zhou, Thorfinn Sand Korneliussen, Mehmet Somel, Courtney Babbitt, Greg Wray, Jianwen Li, Weiming He, Zhuo Wang, Wenjing Fu, Xueyan Xiang, Claire C Morgan, Aoife Doherty, Mary J O’Connell, James O McInerney, Erik W Born, Love Dalén, Rune Dietz, Ludovic Orlando, Christian Sonne, Guojie Zhang, Rasmus Nielsen, Eske Willerslev, Jun Wang (2014) Cell
Mitochondrial DNA diversity of modern, ancient and wild sheep (Ovis gmelinii anatolica) from Turkey: new insights on the evolutionary history of sheep
Sevgin Demirci, Evren Koban Baştanlar, Nihan Dilşad Dağtaş, Evangelia Pişkin, Atilla Engin, Füsun Özer, Eren Yüncü, Şükrü Anıl Doğan, İnci Togan (2013) PLoS One
A scan for human-specific relaxation of negative selection reveals unexpected polymorphism in proteasome genes
Mehmet Somel, Melissa A Wilson Sayres, Gregory Jordan, Emilia Huerta-Sanchez, Matteo Fumagalli, Anna Ferrer-Admetlla, Rasmus Nielsen (2013) Molecular Biology & Evolution
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